Research Articles

Refinement of schizophrenia GWAS loci using methylome-wide association data
Gaurav Kumar*, Shaunna L. Clark, Joseph L. McClay, Andrey A. Shabalin, Daniel E. Adkins, Linying Xie, Robin Chen, Srilaxmi Nerella, Yunjung Kim, Patrick F. Sullivan, Christina M. Hultman, Patrik K.E. Magnusson, Karolina A. Aberg, and Edwin J.C.G. Van Den Oord;
Human Genetics.2014 ; 7 Oct; PubMed

Methylome-Wide Association Study of Schizophrenia: Identifying Blood Biomarker Signatures of Environmental Insults
Karolina A. Aberg, Joseph L. McClay, Srilaxmi Nerella, Shaunna L. Clark, Gaurav Kumar, Wenan Chen, Amit N. Khachane, Linying Xie, Alexandra D. Hudson, Guimin Gao, Aki Harada, Christina M. Hultman, Patrick F. Sullivan, Patrik K.E. Magnusson, and Edwin J.C.G. Van Den Oord;
JAMA Psychiatry.2014 ; 71(3):255-64; PubMed

A methylome-wide study of aging using massively parallel sequencing of the methyl-CpG-enriched genomic fraction from blood in over 700 subjects
Joseph L. McClay, Karolina A. Aberg, Shaunna L. Clark, Srilaxmi Nerella, Gaurav Kumar, Lin Y. Xie, Alexandra D. Hudson, Aki Harada, Christina M. Hultman, Patrik K.E. Magnusson, Patrick F. Sullivan and Edwin J.C.G. Van Den Oord;
Human Molecular Genetics.2014 ; 23(5):1175-85; PubMed

Combined methylome-and genome-wide association study identifies CNTN4 as an epigentic risk factor for alcohol use
Shaunna L. Clark, Karolina A. Aberg, Srilaxmi Nerella, Gaurav Kumar, Joseph L. McClay, Linying Xie, Andrey Shabalin, Christina M. Hultman, Patrik K.E. Magnusson, Patrick F. Sullivan and Edwin J.C.G. Van Den Oord;
Behavior Genetics.2013 ; 43 (6), 513-513;

Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework
Gaurav Kumar Edmond J Breen and Shoba Ranganathan;
BMC Systems Biology.2013 ; 7 : 12; PubMed

In silico prediction of immunogenic T cell epitopes for HLADQ8
Javed Mohammed Khan,Gaurav Kumar and Shoba Ranganathan;
Immunome Research. 2012;8 :1:1; PubMed

Network Study of Human Protein Location
Gaurav Kumar and Shoba Ranganathan;BMC Bioinformatics. 2010;11 Suppl 7:S9; PubMed

3PFDB-Database of best representative PSSM Profiles of Protein Families
Khader Shameer, Paramasivam Nagarajan, Gaurav Kumar and Ramanathan Sowdhamini;
BioData Mining. 2009; 5(5-6); 425-38; PubMed; 3PFDB

FASSM: Enhanced Function Association in whole genome analysis using Sequence and Structural Motifs.
Gaurav Kumar, Nitin Gupta and Ramanathan Sowdhamini;
In Silico Biology; 2005; 5(4);PubMed

Book Chapters

Biological Data Integration using Network Models:
Gaurav Kumar and Shoba Ranganathan;Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data, Wiley-Blackwell (John Wiley & Sons );ISBN: 978-1-118-13273-9; Wiley Online Library

Untangling Biological Networks Using Bioinformatics:
Gaurav Kumar,Adrian P.Cootes and Shoba Ranganathan; Algorithms in Computational Molecular Biology:Techniques, Approaches and Application,
Wiley-Blackwell (John Wiley & Sons );ISBN:0470505192; Amazon

Doctoral Thesis

Data integration and knowledge discovery using Biological networks:
(2012);Macquarie University, Sydney, Australia.

Master Thesis

Biological Sequence Analysis for protein Annotation Based on motif descriptors:
(2006);Tata Institute Of Fundamental Research - Deemed University, Mumbai, India.